Index

A

abbink_onset_detector() (in module biosppy.signals.emg) abp() (in module biosppy.signals.abp) acc() (in module biosppy.signals.acc) activity_index() (in module biosppy.signals.acc) add_event() (biosppy.storage.HDF method) add_header() (biosppy.storage.HDF method) add_logo() (in module biosppy.plotting) add_signal() (biosppy.storage.HDF method)

alloc_h5() (in module biosppy.storage) analytic_signal() (in module biosppy.signals.tools) append() (biosppy.utils.ReturnTuple method) approximate_entropy() (in module biosppy.signals.hrv) as_dict() (biosppy.utils.ReturnTuple method) ASI_segmenter() (in module biosppy.signals.ecg) assess_classification() (in module biosppy.biometrics) assess_runs() (in module biosppy.biometrics) authenticate() (biosppy.biometrics.BaseClassifier method)

B

B() (in module biosppy.synthesizers.ecg) band_power() (in module biosppy.signals.tools) BaseClassifier (class in biosppy.biometrics) basic_scr() (in module biosppy.signals.eda) batch_train() (biosppy.biometrics.BaseClassifier method) biosppy.biometrics module biosppy.clustering module biosppy.features.cepstral module biosppy.features.frequency module biosppy.features.phase_space module biosppy.features.time module biosppy.features.time_freq module biosppy.inter_plotting.acc module biosppy.inter_plotting.ecg module biosppy.metrics module biosppy.plotting module biosppy.quality module biosppy.signals.abp module biosppy.signals.acc module biosppy.signals.bvp module

biosppy.signals.ecg module biosppy.signals.eda module biosppy.signals.eeg module biosppy.signals.emg module biosppy.signals.hrv module biosppy.signals.pcg module biosppy.signals.ppg module biosppy.signals.resp module biosppy.signals.tools module biosppy.stats module biosppy.storage module biosppy.synthesizers.ecg module biosppy.synthesizers.emg module biosppy.timing module biosppy.utils module biosppy_decomposition() (in module biosppy.signals.eda) bonato_onset_detector() (in module biosppy.signals.emg) bSQI() (in module biosppy.signals.ecg) bvp() (in module biosppy.signals.bvp)

C

car_reference() (in module biosppy.signals.eeg) cdist() (in module biosppy.metrics) centroid_templates() (in module biosppy.clustering) cepstral() (in module biosppy.features.cepstral) check_subject() (biosppy.biometrics.BaseClassifier method) christov_segmenter() (in module biosppy.signals.ecg) clear() (in module biosppy.timing) clear_all() (in module biosppy.timing) close() (biosppy.storage.HDF method) coassoc_partition() (in module biosppy.clustering) color_palette() (in module biosppy.plotting) combination() (in module biosppy.biometrics) CombinationError compare_segmentation() (in module biosppy.signals.ecg) compute_fbands() (in module biosppy.features.frequency) (in module biosppy.signals.hrv)

compute_geometrical() (in module biosppy.signals.hrv) compute_poincare() (in module biosppy.signals.hrv) compute_recurrence_plot() (in module biosppy.features.phase_space) compute_rri() (in module biosppy.signals.hrv) compute_wavelet() (in module biosppy.features.time_freq) consensus() (in module biosppy.clustering) consensus_kmeans() (in module biosppy.clustering) correct_rpeaks() (in module biosppy.signals.ecg) create_coassoc() (in module biosppy.clustering) create_ensemble() (in module biosppy.clustering) cross_validation() (biosppy.biometrics.BaseClassifier class method) (in module biosppy.biometrics) cSQI() (in module biosppy.quality) cvx_decomposition() (in module biosppy.signals.eda)

D

dbscan() (in module biosppy.clustering) del_event() (biosppy.storage.HDF method) del_event_group() (biosppy.storage.HDF method) del_signal() (biosppy.storage.HDF method) del_signal_group() (biosppy.storage.HDF method) delete() (biosppy.utils.ReturnTuple method)

deserialize() (in module biosppy.storage) detrend_smoothness_priors() (in module biosppy.signals.tools) detrend_window() (in module biosppy.signals.hrv) diff_stats() (in module biosppy.stats) dismiss() (biosppy.biometrics.BaseClassifier method) distance_profile() (in module biosppy.signals.tools) dumpJSON() (in module biosppy.storage)

E

ecg() (in module biosppy.signals.ecg) (in module biosppy.synthesizers.ecg) ecg_based_segmentation() (in module biosppy.signals.pcg) ecg_sqi_level3() (in module biosppy.quality) eda() (in module biosppy.signals.eda) eda_events() (in module biosppy.signals.eda) eda_sqi_bottcher() (in module biosppy.quality) eeg() (in module biosppy.signals.eeg)

EER_IDX (biosppy.biometrics.BaseClassifier attribute), [1] (biosppy.biometrics.KNN attribute), [1] (biosppy.biometrics.SVM attribute), [1] emg() (in module biosppy.signals.emg) emotiphai_eda() (in module biosppy.signals.eda) engzee_segmenter() (in module biosppy.signals.ecg) enroll() (biosppy.biometrics.BaseClassifier method) evaluate() (biosppy.biometrics.BaseClassifier method) extract_heartbeats() (in module biosppy.signals.ecg)

F

fileparts() (in module biosppy.utils) filter() (biosppy.signals.tools.OnlineFilter method) filter_signal() (in module biosppy.signals.tools) find_extrema() (in module biosppy.signals.tools) find_intersection() (in module biosppy.signals.tools) find_onsets() (in module biosppy.signals.emg) find_onsets_elgendi2013() (in module biosppy.signals.ppg) find_onsets_kavsaoglu2016() (in module biosppy.signals.ppg)

find_onsets_zong2003() (in module biosppy.signals.abp) find_peaks() (in module biosppy.signals.pcg) finite_difference() (in module biosppy.signals.tools) flush() (biosppy.biometrics.BaseClassifier method) freq_to_mel() (in module biosppy.features.cepstral) frequency() (in module biosppy.features.frequency) frequency_domain_feature_extractor() (in module biosppy.signals.acc) fSQI() (in module biosppy.signals.ecg) fullfile() (in module biosppy.utils)

G

gamboa_segmenter() (in module biosppy.signals.ecg) get_auth_rates() (in module biosppy.biometrics) get_auth_thr() (biosppy.biometrics.BaseClassifier method) get_avg_heart_rate() (in module biosppy.signals.pcg) get_event() (biosppy.storage.HDF method) get_filter() (in module biosppy.signals.tools) get_header() (biosppy.storage.HDF method) get_heart_rate() (in module biosppy.signals.tools) get_id_rates() (in module biosppy.biometrics)

get_id_thr() (biosppy.biometrics.BaseClassifier method) get_plf_features() (in module biosppy.signals.eeg) get_power_features() (in module biosppy.signals.eeg) get_signal() (biosppy.storage.HDF method) get_subject_results() (in module biosppy.biometrics) get_thresholds() (biosppy.biometrics.BaseClassifier method) getPPositions() (in module biosppy.signals.ecg) getQPositions() (in module biosppy.signals.ecg) getSPositions() (in module biosppy.signals.ecg) getTPositions() (in module biosppy.signals.ecg)

H

hamilton_segmenter() (in module biosppy.signals.ecg) HDF (class in biosppy.storage) hierarchical() (in module biosppy.clustering) highestAveragesAllocator() (in module biosppy.utils) histogram() (in module biosppy.stats) hjorth_features() (in module biosppy.features.time)

hodges_bui_onset_detector() (in module biosppy.signals.emg) homomorphic_filter() (in module biosppy.signals.pcg) hosSQI() (in module biosppy.quality) hrv() (in module biosppy.signals.hrv) hrv_frequencydomain() (in module biosppy.signals.hrv) hrv_nonlinear() (in module biosppy.signals.hrv) hrv_timedomain() (in module biosppy.signals.hrv)

I

I() (in module biosppy.synthesizers.ecg) identify() (biosppy.biometrics.BaseClassifier method) identify_heart_sounds() (in module biosppy.signals.pcg)

io_del() (biosppy.biometrics.BaseClassifier method) io_load() (biosppy.biometrics.BaseClassifier method) io_save() (biosppy.biometrics.BaseClassifier method)

J

join() (biosppy.utils.ReturnTuple method)

K

kbk_scr() (in module biosppy.signals.eda) keys() (biosppy.utils.ReturnTuple method)

kmeans() (in module biosppy.clustering) KNN (class in biosppy.biometrics) kSQI() (in module biosppy.signals.ecg)

L

lidierth_onset_detector() (in module biosppy.signals.emg) linear_regression() (in module biosppy.stats) list_events() (biosppy.storage.HDF method) list_signals() (biosppy.storage.HDF method) list_subjects() (biosppy.biometrics.BaseClassifier method)

load() (biosppy.biometrics.BaseClassifier class method) load_h5() (in module biosppy.storage) load_txt() (in module biosppy.storage) loadJSON() (in module biosppy.storage) londral_onset_detector() (in module biosppy.signals.emg)

M

majority_rule() (in module biosppy.biometrics) mdist_templates() (in module biosppy.clustering) mean_waves() (in module biosppy.signals.tools) median_waves() (in module biosppy.signals.tools) mel_to_freq() (in module biosppy.features.cepstral) mfcc() (in module biosppy.features.cepstral) module biosppy.biometrics biosppy.clustering biosppy.features.cepstral biosppy.features.frequency biosppy.features.phase_space biosppy.features.time biosppy.features.time_freq biosppy.inter_plotting.acc biosppy.inter_plotting.ecg biosppy.metrics biosppy.plotting biosppy.quality biosppy.signals.abp biosppy.signals.acc biosppy.signals.bvp biosppy.signals.ecg biosppy.signals.eda biosppy.signals.eeg biosppy.signals.emg biosppy.signals.hrv biosppy.signals.pcg biosppy.signals.ppg biosppy.signals.resp biosppy.signals.tools biosppy.stats biosppy.storage biosppy.synthesizers.ecg biosppy.synthesizers.emg biosppy.timing biosppy.utils

N

normalize() (in module biosppy.signals.tools)

normpath() (in module biosppy.utils)

O

OnlineFilter (class in biosppy.signals.tools)

outliers_dbscan() (in module biosppy.clustering) outliers_dmean() (in module biosppy.clustering)

P

P() (in module biosppy.synthesizers.ecg) pack_zip() (in module biosppy.storage) paired_test() (in module biosppy.stats) pcg() (in module biosppy.signals.pcg) pcosine() (in module biosppy.metrics) pdist() (in module biosppy.metrics) pearson_correlation() (in module biosppy.signals.tools) (in module biosppy.stats) phase_locking() (in module biosppy.signals.tools) phase_space() (in module biosppy.features.phase_space) plot_abp() (in module biosppy.plotting) plot_acc() (in module biosppy.inter_plotting.acc) (in module biosppy.plotting) plot_bcg() (in module biosppy.plotting) plot_biometrics() (in module biosppy.plotting) plot_bvp() (in module biosppy.plotting) plot_clustering() (in module biosppy.plotting) plot_ecg() (in module biosppy.inter_plotting.ecg) (in module biosppy.plotting)

plot_eda() (in module biosppy.plotting) plot_eeg() (in module biosppy.plotting) plot_emg() (in module biosppy.plotting) plot_filter() (in module biosppy.plotting) plot_hrv() (in module biosppy.plotting) plot_hrv_fbands() (in module biosppy.plotting) plot_hrv_hist() (in module biosppy.plotting) plot_pcg() (in module biosppy.plotting) plot_poincare() (in module biosppy.plotting) plot_ppg() (in module biosppy.plotting) plot_resp() (in module biosppy.plotting) plot_rri() (in module biosppy.plotting) plot_spectrum() (in module biosppy.plotting) power_spectrum() (in module biosppy.signals.tools) ppg() (in module biosppy.signals.ppg) ppg_segmentation() (in module biosppy.signals.ppg) Pq() (in module biosppy.synthesizers.ecg) pSQI() (in module biosppy.signals.ecg)

Q

Q1() (in module biosppy.synthesizers.ecg) Q2() (in module biosppy.synthesizers.ecg)

quality_ecg() (in module biosppy.quality) quality_eda() (in module biosppy.quality) quartiles() (in module biosppy.stats)

R

R() (in module biosppy.synthesizers.ecg) random_fraction() (in module biosppy.utils) rec_times() (in module biosppy.signals.eda) recurrence_plot_features() (in module biosppy.features.phase_space) remainderAllocator() (in module biosppy.utils)

reset() (biosppy.signals.tools.OnlineFilter method) resp() (in module biosppy.signals.resp) ReturnTuple (class in biosppy.utils) rms_error() (in module biosppy.signals.tools) rri_correction() (in module biosppy.signals.hrv) rri_filter() (in module biosppy.signals.hrv)

S

S() (in module biosppy.synthesizers.ecg) sample_entropy() (in module biosppy.signals.hrv) save() (biosppy.biometrics.BaseClassifier method) serialize() (in module biosppy.storage) set_auth_thr() (biosppy.biometrics.BaseClassifier method) set_id_thr() (biosppy.biometrics.BaseClassifier method) signal_cross_join() (in module biosppy.signals.tools) signal_self_join() (in module biosppy.signals.tools) signal_stats() (in module biosppy.signals.tools) silva_onset_detector() (in module biosppy.signals.emg) smoother() (in module biosppy.signals.tools) solnik_onset_detector() (in module biosppy.signals.emg)

spectral_features() (in module biosppy.features.frequency) squareform() (in module biosppy.metrics) ssf_segmenter() (in module biosppy.signals.ecg) sSQI() (in module biosppy.signals.ecg) St() (in module biosppy.synthesizers.ecg) store_h5() (in module biosppy.storage) store_txt() (in module biosppy.storage) SubjectError SVM (class in biosppy.biometrics) synchronize() (in module biosppy.signals.tools) synth_gaussian() (in module biosppy.synthesizers.emg) synth_uniform() (in module biosppy.synthesizers.emg)

T

T() (in module biosppy.synthesizers.ecg) tac() (in module biosppy.timing) tic() (in module biosppy.timing)

time() (in module biosppy.features.time) time_domain_feature_extractor() (in module biosppy.signals.acc) time_freq() (in module biosppy.features.time_freq)

U

unpack_zip() (in module biosppy.storage) unpaired_test() (in module biosppy.stats)

UntrainedError update_thresholds() (biosppy.biometrics.BaseClassifier method)

W

walktree() (in module biosppy.utils)

welch_spectrum() (in module biosppy.signals.tools) windower() (in module biosppy.signals.tools)

Z

zero_cross() (in module biosppy.signals.tools)

zip_write() (in module biosppy.storage) ZZ2018() (in module biosppy.signals.ecg)